Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score =  739 bits (1908), Expect = 0.0
 Identities = 387/625 (61%), Positives = 468/625 (74%), Gaps = 7/625 (1%)

Query: 4   NPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDAD 63
           +P SQ+  L+ RGKEQGYLTYAEVNDHLP  I +SEQ+EDIIQM+ D+GI V E AP++D
Sbjct: 6   SPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHERAPESD 65

Query: 64  DLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123
           D    D+    DE A E AAA L+SVE+E GRTTDPVRMYMREMGTVELLTREGEI IAK
Sbjct: 66  DAMFEDNAEAADEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGEISIAK 125

Query: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHI 183
           RIE+GI  V  +IA +P  +  +L+++   Q  E RL D++SG++DP   E         
Sbjct: 126 RIEEGIRDVLHSIAYWPNAVEVVLKEYKDYQEGERRLADILSGYLDPESDEEIPEVIEDA 185

Query: 184 GSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNL 243
             E  E + A +    V+ +D++E+E+      DSE + G DPE+A+ +F EL   +Q  
Sbjct: 186 VLEEDEDETASKSTKEVKLDDDEEEEEESESDDDSEADSGPDPEIAKVRFTELETVWQET 245

Query: 244 QLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAV 303
           +  + + GRDS +A  A + +  +F  F+ TP+ FD + E +R + +++RT ER +M+  
Sbjct: 246 KSVIEKHGRDSAEAKAALEALASVFMMFKFTPRLFDIISEMIRGTHEQIRTSEREIMRYA 305

Query: 304 VEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSI----QKLQMI 359
           V   +M +  F   F G ESN  WLD+ +A   P    ++   E++R  +    QK+  I
Sbjct: 306 VRRGRMDRTQFRTSFPGQESNPGWLDEQMAKASP---DIKGHLEKVRPDVLAFQQKIADI 362

Query: 360 EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 419
           E+E  L+V  IKDIS+RM+IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 363 EKELGLNVIDIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 422

Query: 420 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 479
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NR+S
Sbjct: 423 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVS 482

Query: 480 RQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 539
           RQ+LQEMGREP PEEL ER++M E K+RKVLKIAKEPISMETPIGDDEDSHLGDFIED  
Sbjct: 483 RQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQN 542

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
           +  P+D+AT+  LK ATR+VL  LT REAKVL+MRFGIDM TDHTLEEVGKQFDVTRERI
Sbjct: 543 ITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERI 602

Query: 600 RQIEAKALRKLRHPSRSEVLRSFLD 624
           RQIEAKALRKLRHPSRSE LRSFL+
Sbjct: 603 RQIEAKALRKLRHPSRSEHLRSFLE 627