Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  227 bits (579), Expect = 4e-64
 Identities = 138/409 (33%), Positives = 214/409 (52%), Gaps = 15/409 (3%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L++  V++AK SDK   L DG GL L V  +G K W LKY     +KR  +S G +PD  
Sbjct: 3   LSDATVRKAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYRFGGKEKR--LSLGTYPDTG 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR+RR  A+ LLA  +DP   +  +         N+F   +  WL +K+        
Sbjct: 61  LADARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAANSFEVVAREWLAVKKPEWTAGQF 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
            K    LE H  P++G +P+ DI    +  +   +  QG +E   RL   ++ V R AVA
Sbjct: 121 AKECGRLENHAFPRIGALPVADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRVFRFAVA 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTI-EPERLPELMQAIANANITLATRCLLEWQLHTM 246
           +     +  AD+    P+   Q+  TI +PER+ ELM+AI     TL  +C L+      
Sbjct: 181 TERASRDPAADLRDTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLPVQCALKLAPLWF 240

Query: 247 TRPIESATARWQ--DIDFKNKVWVIPAERMKMKR---------PHTIPLTEQTLALLEIM 295
            RP E   A W   D+D ++  + +P    K+K+         PH +PL+ Q L +L  +
Sbjct: 241 CRPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVPLSRQALEILREL 300

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPD 355
           + ++ H  Y+FP  ++PK H++  + N AL R+GYKG +  HG R +A T L E G+NP+
Sbjct: 301 RQLTGHGRYLFPGARDPKRHMSDGAVNAALARIGYKGIITGHGFRHMARTLLGELGWNPE 360

Query: 356 IIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLA 404
            +E  L+H +   V   YN+A++L +RRK+M  W+ ++ S    +T+ A
Sbjct: 361 ALERQLSHKEPG-VAGVYNKAQHLPERRKVMQAWADYLDSLRAGSTASA 408