Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Prophage integrase IntS from Xanthobacter sp. DMC5

 Score =  234 bits (597), Expect = 4e-66
 Identities = 149/397 (37%), Positives = 218/397 (54%), Gaps = 15/397 (3%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+T +K AK  +K Y LSD +GL L V   G KLW L Y      K+  ++FG +  V+
Sbjct: 2   LTDTAIKAAKPKEKPYKLSDAEGLHLLVTPQGGKLWRLAYR--FGGKQRQLTFGSYKYVT 59

Query: 68  LAEARKRRSEAKTLLALNIDP----KQHKDEQLLKERAELENTFGKYSDRWLT-LKRESV 122
           LAEAR+RR+EAK LLA  +DP    K  K EQ   E A  +NTFG  +  ++  +++E  
Sbjct: 60  LAEARERRTEAKRLLASGVDPGANIKSRKAEQRAAEEAA-QNTFGVVASEFIEKIRKEGR 118

Query: 123 KPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVM 182
            P T +KA   L     P L + PI +I  R VL +L  V+A+G  E  +R    I  V+
Sbjct: 119 APATMEKAEWLLRTIAAP-LADRPISEITAREVLDVLRHVEAKGNHEAARRARSTIGRVL 177

Query: 183 RLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPER-LPELMQAIANANITLATR-CLLE 240
           R A+A+   E +  +D+     AP  QH   I  E+ L +LM AI   N    T    L+
Sbjct: 178 RYAIATDRAERDVTSDLKGALIAPPVQHRAAITEEKALGKLMAAIYGWNRGQPTTVAALK 237

Query: 241 WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS 300
                  RP E   ARW +ID +  VW+IPA R KM+R H  PL  Q + +L+ ++P++ 
Sbjct: 238 LLAMLALRPGEVRAARWSEIDLEKAVWIIPAGRTKMRRQHRTPLPRQAVEVLKALRPVTD 297

Query: 301 H--REYIFPSNKNPKSHVNSQSANMALKRMGY-KGQLVSHGLRALASTTLNE-QGFNPDI 356
                 +F +  +    ++  + N+A++R+G+   ++ SHG RA  +T  NE + ++PD 
Sbjct: 298 RGPDSLVFHATTSVLKPISENTLNVAIRRLGFTASEMTSHGFRAAFATLANESRKWHPDA 357

Query: 357 IEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           IE  LAHV+ N VR+AY R E+ E+R  LM WW+ H+
Sbjct: 358 IERQLAHVEGNNVRRAYTRGEHWEERITLMQWWADHL 394