Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  136 bits (342), Expect = 1e-36
 Identities = 114/386 (29%), Positives = 179/386 (46%), Gaps = 31/386 (8%)

Query: 26  SDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALN 85
           +DG  L L + TNG + WI  Y      K+  +  G   DVSLA AR+    A+  LA  
Sbjct: 23  ADGGNLYLSISTNGGRRWIFLYRW--AGKQLEMGLGSARDVSLARARELADAARAQLAEG 80

Query: 86  IDPKQHKDEQLLKERAE--LENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILP--- 140
           ++P       L   RAE  +  TFG+++D  +    + ++    ++ +R   +H L    
Sbjct: 81  VNP-------LDARRAERVVIPTFGEFADGLV----QDIQSGFRNEKHRWQWQHTLEVYA 129

Query: 141 -KLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA----SGDIEVNY 195
             L  + I  +    VL IL+P+  Q   ET  RL   I  V+  A A    +GD    +
Sbjct: 130 AALRPIQIDSVTTEDVLGILQPLW-QTKQETASRLRGRIERVLDAAKAKGLRAGDNPARW 188

Query: 196 LADITKLFPAPK---RQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMTRPIES 252
              +  L P  +   R H   +    +P  +  +     T A    LE+ + T  R  E 
Sbjct: 189 RGHLDALLPKRQKLQRGHHPALPHASVPAFVAELQKRRATAALA--LEFAILTAARSGEV 246

Query: 253 ATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFPSNKNP 312
             A W +ID K K+W +PA RMK  + H +PL+++ L +L+      +   ++FP  +  
Sbjct: 247 LGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEILDEAAAQRTDGGFVFPGPRKG 306

Query: 313 KSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNE-QGFNPDIIEAALAHVDKNEVRK 371
           K   N   A +   RM  + ++  HG R+       E   F  ++ EAALAH   +EV +
Sbjct: 307 KPLSNMAMAMLLRVRM-KRPEITVHGFRSSFRDWAGECTSFPREVAEAALAHTVGDEVER 365

Query: 372 AYNRAEYLEQRRKLMSWWSSHITSAS 397
           AY RA+ LE+RRKLM  W+ ++T  +
Sbjct: 366 AYRRADALEKRRKLMEAWAKYVTGGA 391