Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  140 bits (354), Expect = 5e-38
 Identities = 125/424 (29%), Positives = 198/424 (46%), Gaps = 37/424 (8%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA+ +  LT   V   K+  +     DG  L L++   G+K W+  +      KR  +  
Sbjct: 1   MAREMNRLTARTVASLKDPGR---YPDGGNLYLQIGPTGSKAWLFMFKRD--GKRREMGL 55

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQL-LKERAELENTFGKYSDRWLTLKR 119
           G   DV+LA AR +  EA+ ++A   DP   ++  L +++ AE   TFG ++D  +T   
Sbjct: 56  GSLNDVTLAAARMKADEARRIVADGGDPFAVREAALAVRKEAEAAPTFGAFADALITKLA 115

Query: 120 ESVKPETADKAYR-ALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRII 178
              + E     ++  L       + ++ I DI    +L +LEP+  Q   ET  RL   I
Sbjct: 116 HGFRNEKHVAQWQMTLGPTYCSAIRDMKIADITAVDILKVLEPIW-QDKNETASRLRGRI 174

Query: 179 NEVMRLA----VASGDIEVNYLADIT-KLFPAPKRQ--HMVTIEPERLPELMQAIANANI 231
             V+  A    + +G+    +  ++  +L    K Q  H   +    +P  + A+  A  
Sbjct: 175 ERVLDAAKVEGLRTGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVAL-RARP 233

Query: 232 TLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLAL 291
            +A R L E+ + T  R  E  +A W +IDFK  VW +PA RMK  R H +PL++  +A+
Sbjct: 234 AMAARAL-EFAILTAARSGEVLSATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAIAV 292

Query: 292 LEIMKPISSHRE-------YIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLR-ALA 343
           L   +P   HR        ++FP  + P   +++ +  M L+R   K     HG R +  
Sbjct: 293 LREAEP---HRRGDDPETAFLFPGLR-PMRPLSTMAMEMLLRRQ--KQVFTVHGFRSSFR 346

Query: 344 STTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSL 403
                E  F  +I EAALAHV  +   +AY R + LE+RR LM+ W      A+ C T  
Sbjct: 347 DWAAEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDLMTAW------ATFCTTEP 400

Query: 404 AERK 407
           AE+K
Sbjct: 401 AEQK 404