Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., integrase from Pseudomonas simiae WCS417

 Score =  135 bits (341), Expect = 2e-36
 Identities = 116/402 (28%), Positives = 191/402 (47%), Gaps = 29/402 (7%)

Query: 14  KQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARK 73
           KQ +   +  T  DGDGL+L VK  G K W+L++   +  +R  +  G FP+VSL +AR+
Sbjct: 7   KQVENLTEPGTYEDGDGLRLVVKPTGRKSWLLRFQ--LAGRRREMGLGSFPEVSLKKARQ 64

Query: 74  RRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE------SVKPETA 127
             S  ++ L+  IDP   +D +   +R E E        ++ TL  E      ++  E  
Sbjct: 65  AASAKRSQLSDGIDPLAARDLERAAQR-EAERVSEAKKLKFETLATEYRDAHGAMWSEKW 123

Query: 128 DKAY-RALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAV 186
            K + R LE +    +G +  +DI    VL +L+P+ A  T  T   +   I +V+  A 
Sbjct: 124 RKGWLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKT-RTADEVRGQIEQVLDAAK 182

Query: 187 A----SGDIEVNYLADITKLFP------APKRQHMVTIEPERLPELMQAIANANITLATR 236
           A     G+    +   +  L        A KR+H   +  + +P+LM  +  AN T  + 
Sbjct: 183 ARNLREGENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKL-RANSTPPSW 241

Query: 237 CLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMK 296
              +  + T  R      ARW + D +   W +P ERMKM+    IPL E+ + L++ + 
Sbjct: 242 AA-QLLIMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSI- 299

Query: 297 PISSHREYIFPSN-KNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNP- 354
           P      ++FP   K    H N+      L  +GY+  +  HG R+       E    P 
Sbjct: 300 PRDEGSAFLFPGQGKTGVMHANA--VRTLLHGIGYE-HITRHGFRSSFRDWAGECTHYPR 356

Query: 355 DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSA 396
           ++ E ALAH ++++   AY+R+++L++RR LM+ WS  I +A
Sbjct: 357 EVCEMALAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFINTA 398