Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  226 bits (577), Expect = 7e-64
 Identities = 129/392 (32%), Positives = 206/392 (52%), Gaps = 3/392 (0%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+T  KQAK  +  YT+ D  GL L V  +G K W  ++T     K+  IS G +P+  
Sbjct: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTW--LGKQVRISIGTYPETG 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L EAR RR EA+  +A  +DP+  + E+     A    TF +  D WL  ++ S+ P T 
Sbjct: 61  LKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTY 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
                A+   +LP LG+  I  IK   V++++  V+ +G++ T  ++ + +++V   A+A
Sbjct: 121 RVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIA 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEP-ERLPELMQAIANANITLATRCLLEWQLHTM 246
           +G IE N  A++  +     +       P   +P +M AI +       +  L   ++T 
Sbjct: 181 TGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIYTA 240

Query: 247 TRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIF 306
           +RP E   A W +ID    +W  PA +MKM+R H +PL+ Q +A+LE M PI+  + Y+F
Sbjct: 241 SRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGDKRYVF 300

Query: 307 PSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDK 366
            +  +  + + +  AN  +   G  G    HG R L ST +N +G+N D IE  LAH D 
Sbjct: 301 INRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQLAHADS 360

Query: 367 NEVRKAYNRAEYLEQRRKLMSWWSSHITSASN 398
           + +R  YN A YL+QRR +M  W+  +T  ++
Sbjct: 361 SFIRDVYNHATYLDQRRGMMQEWADLVTPTTS 392