Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score =  208 bits (530), Expect = 2e-58
 Identities = 122/387 (31%), Positives = 197/387 (50%), Gaps = 2/387 (0%)

Query: 7   PLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDV 66
           PL +T +   +     Y   DG+GL  RVK NG K W L+Y  P   K + +  G +P++
Sbjct: 10  PLADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKP-DGKWSWLGLGGYPEI 68

Query: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPET 126
           S + AR++ ++ +   +   +P   K  + + ++    NTF      W   +R S +  T
Sbjct: 69  SGSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGT 128

Query: 127 ADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAV 186
           + +   ALE H+ P  G     +I P   +  L  ++ +G +E + R+     E+  LA 
Sbjct: 129 SRRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLAR 188

Query: 187 ASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTM 246
            +G    N L  ++K   +   ++   +  E LP L++AI +       R  L       
Sbjct: 189 VTGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLA 248

Query: 247 TRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIF 306
           +RP E   ARW +ID   K+W IPAERMK +R H +PL+ Q++  L  ++ ++     +F
Sbjct: 249 SRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLF 308

Query: 307 PSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDK 366
           P  K+     ++    MAL+R+GY G+   HG R +AST LNEQGF+ + IEA L+H  K
Sbjct: 309 PGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-K 367

Query: 367 NEVRKAYNRAEYLEQRRKLMSWWSSHI 393
             +   YN+A YL QRR +M W++ H+
Sbjct: 368 EGIAGVYNKAVYLPQRRVMMQWYADHL 394