Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., symbiosis island integrase from Sphingobium sp. HT1-2

 Score =  138 bits (348), Expect = 3e-37
 Identities = 121/417 (29%), Positives = 193/417 (46%), Gaps = 33/417 (7%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT  +VK A    K  T SDGDGL L+V   G   W+L+  H    +R +I  G    V+
Sbjct: 4   LTANEVKAALS--KPGTYSDGDGLFLKVSKTGGASWLLRVQHE--GERRDIGLGSAKLVT 59

Query: 68  LAEARKRRSEAKTLLA-----LNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESV 122
           LA  R + +EA+  +      L  + ++ K E +L   A L   F  +  +W   K E  
Sbjct: 60  LAGVRAKAAEARRAIREDGRDLVAEKRKAKAESVLFREAAL-TYFETHKSQWSNTKSE-- 116

Query: 123 KPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVM 182
                D+   ++E +  P LG+ P+  I    +++ +  +  +   ET +R+ + I  V+
Sbjct: 117 -----DQWINSMEAYAFPSLGSKPVGSITAGEIITAISKIWTEKP-ETGRRVKQRIRAVL 170

Query: 183 RLAVASG----DIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCL 238
             A A G    +   + LA    L      +H   +    LP  +  +  A  T + R  
Sbjct: 171 NFAHARGWRSTEAPADALAAGNGLPKQRSGKHHAAMPYADLPAFITRLRTAGGTWS-RLA 229

Query: 239 LEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPI 298
           LE+ + T  R  E   A W +ID +  +W +PA+ MKM+  H +PL+   L +L     I
Sbjct: 230 LEFVILTAARSQEVRLATWSEIDLEKGLWTVPADHMKMRIEHVVPLSPHALTVLHSAMAI 289

Query: 299 SSH-REYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNP-DI 356
                + IFP        ++  +    L+RM  K     HG R+   T + E+   P ++
Sbjct: 290 RRQGTDLIFPGANG--GAMSDMTLLAVLRRM--KEPTTVHGFRSSFRTWVAEETNVPGEV 345

Query: 357 IEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKVLKLAG 413
            EAALAH ++NEV +AY R   L++RRKLM  W ++ ++    +T+LA     K AG
Sbjct: 346 AEAALAHQNRNEVERAYQRGGLLDKRRKLMEAWGAYCSN----DTALANVVPFKQAG 398