Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score =  234 bits (598), Expect = 3e-66
 Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 7/390 (1%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L+   + +AK  +K Y L+DG GL L V   G + W + Y      K   ++ G FP ++
Sbjct: 3   LSALALSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYR--FDGKAKTMAMGVFPLIT 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLK-RESVKPET 126
           LAEAR++R +A+ LLA   DP   + E   +E  E    F   ++ WL  + RE +   T
Sbjct: 61  LAEAREKREDARKLLAAGSDPCAKRKEIEAQEAFEATTGFRIVAEEWLAKREREGLGDIT 120

Query: 127 ADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAV 186
             K    LE    P LG+  I +I    +L++L  V+ +G  ET +RL  +   V R A+
Sbjct: 121 IGKIKWLLE-FAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVFRYAI 179

Query: 187 ASGDIEVNYLADITKLFPAPKRQHMVTI-EPERLPELMQAIANANITLATRCLLEWQLHT 245
           A+G  E +  A++      PK +H+  I   +++  L++AI   +    T+  L    H 
Sbjct: 180 ATGRAEHDLSANLRDALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHV 239

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
             RP E   A W +IDF+  +W IPAE+MKM+RPH +PL+ Q+L +L  ++ ++   +++
Sbjct: 240 FVRPGELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGAGKFV 299

Query: 306 FPSNKNPKSHVNSQSANMALKRMGYKG-QLVSHGLRALASTTLNEQG-FNPDIIEAALAH 363
           FP  ++ K  ++  + N AL+R+GY G ++ SHG RA+AST LNE G ++PD IE  LAH
Sbjct: 300 FPGFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIERQLAH 359

Query: 364 VDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
            + + VR+AY R EY E+R  +M  WS ++
Sbjct: 360 AEADAVRRAYARGEYWEERVVMMQAWSDYL 389