Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., DUF4102 domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  257 bits (657), Expect = 4e-73
 Identities = 147/400 (36%), Positives = 229/400 (57%), Gaps = 20/400 (5%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILK-YTHPITKKRNNISFGCFPDV 66
           LT+T +KQAK + K YTL+DGDGL L+V T G+K W  + Y H    K+  IS G +PDV
Sbjct: 3   LTDTAIKQAKPASKPYTLTDGDGLSLQVPTTGSKRWHFRFYWHD---KQLRISLGTYPDV 59

Query: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESV---K 123
           SL EAR+RR  A+ L+A NIDP+ H+  +  K    ++NTF   +DRW   + + +   K
Sbjct: 60  SLKEARRRREAARALVASNIDPRSHRRAERQKASRAVKNTFEAVADRWHEFRSKKLTKSK 119

Query: 124 PETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMR 183
             +A +A + L+K +LP LG++PI DI    VL ++  ++ +G L + +++   +N++ R
Sbjct: 120 KGSAGQASKYLKKDMLPCLGDLPIADISRGDVLELIRRIERRGALVSARKVRTWLNQIFR 179

Query: 184 LAVASGDIEVNYLADITKLFPAPKR-QHMVTIEPERLPELMQAIANANITLATRCLLEWQ 242
            A+A G I+VN  AD+  +   P+  +H   ++   LP L++ + +      TR  +   
Sbjct: 180 FAMAEGLIDVNPAADLDIVAETPRPVRHNPFLQVNELPGLLRTVTHYEGAEKTRLGIRLL 239

Query: 243 LHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKR-----------PHTIPLTEQTLAL 291
           L T  R  E   A     DF   +W +P E +K  R           P+ IPL+ Q +A+
Sbjct: 240 LLTGVRTGELRAATPDQFDFDKGIWRVPPEGVKQLRNRVRTQGNEIPPYVIPLSTQAIAI 299

Query: 292 LE-IMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQ 350
           ++ +M+  +    Y+      P+  ++  + N A+ RMGYKG+L  HG+RA  ST LNE 
Sbjct: 300 VQRLMQLRTRGARYLLVHRYEPQEMISENTLNTAISRMGYKGRLTGHGIRATISTALNEV 359

Query: 351 GFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWS 390
           GF  + IEA L+H D N++R AYN AEY+E RR++M +W+
Sbjct: 360 GFVEEWIEAQLSHADSNQIRAAYNHAEYVEPRRRMMQYWA 399