Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., site-specific integrase from Paraburkholderia sabiae LMG 24235

 Score =  167 bits (422), Expect = 7e-46
 Identities = 123/399 (30%), Positives = 189/399 (47%), Gaps = 16/399 (4%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ Q K  +  DK        GL L     G+K W L++T P+T KR +   G +P+VS
Sbjct: 3   LTDRQAKALQAGDKPVFDGKVTGLLLTPGKTGSK-WTLRFTSPVTGKRRDAGLGVYPEVS 61

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKD-EQLLKERAELENTFGKYS-DRWLTLKRESVKPE 125
           +A+AR++    + L+    DP   ++ EQ     A    TF K + +    LK      +
Sbjct: 62  IADAREKALAMRKLIDGGADPIDARNREQQAASVAAAALTFEKAARELHGELKPGWKNAK 121

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A +    LE +  PK+GN P+  I P     +L P+      ET  R  + ++ VM+ A
Sbjct: 122 HAAQWISTLEAYAFPKIGNKPLGAITPADCADVLRPIWLDKA-ETASRTRQRMHAVMQWA 180

Query: 186 VASGDIEVNYLADITKLFP--APKRQHMVTIEPERLPELMQA-IANANITLATRCLLEWQ 242
            A G I  N ++ +  + P    K++H   +    +P   +A + +  +   TR  L + 
Sbjct: 181 WAHGHIVANPVSVVDHILPKQGTKKEHQPAMPWRDVPAFAKAQLRDIELRDNTRAALLFL 240

Query: 243 LHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHR 302
           + T  R  E   A W + D    +W +  ERMK K PH +PL+   LAL++ +K    H 
Sbjct: 241 ILTAARSGEVRGATWAEFDLNVGIWTVSGERMKAKEPHRVPLSVAALALVKRLKEQKQHE 300

Query: 303 EYIFPSNKNPKSHVNSQSANMA-LKRMGYKGQ-----LVSHGLRALASTTLNEQGFNPDI 356
             +FPS   P+  V S     A L+R+  K         +HG R+      +E G+  D+
Sbjct: 301 TLVFPS---PRGKVLSDMTLTALLRRVNAKSDTPGRAATAHGFRSSFRDWASENGYARDL 357

Query: 357 IEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
            E ALAH   N+V  AY+R + LEQRR LM  W+ H+ S
Sbjct: 358 AERALAHTIANKVEAAYHRTDLLEQRRPLMEKWAEHVCS 396