Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  139 bits (351), Expect = 1e-37
 Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 22/362 (6%)

Query: 46  KYTHPITKKRNNISFGCF--PDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAEL 103
           ++ + +  +R  ++ G +    +SLA AR++  +AK  +A    P   K  +  K R   
Sbjct: 14  RFDYRLNGRRETLTIGRYGPAGISLAMAREKLLDAKKAVAQGKSPAHEKQRE--KRRLTA 71

Query: 104 ENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVK 163
              FG  + +WL   R +       K+   +++ ILP   N  + +I    + ++   VK
Sbjct: 72  AKNFGDMTAQWLASARMADSTRAMRKSI--VDRDILPAFQNRLLNEITADDLRALCGKVK 129

Query: 164 AQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADITKLFPA---PKRQHMVTIEPERLP 220
            +G   T   +  I+ +V   A+  G+   N  AD+     A   PK + +  +E   + 
Sbjct: 130 GRGAPATAVHVRDIVKQVYAFAILHGEKVDNPAADVGAASIATFVPKDRALSPLEIRLMS 189

Query: 221 ELMQAIAN-ANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRP 279
             M+++A    I LA R +L     T+ R  E   A W ++DF+   W IP +RMK + P
Sbjct: 190 RQMESVATYPTIRLALRMILL----TLVRKSELIEATWDEVDFETATWTIPKQRMKGRNP 245

Query: 280 HTIPLTEQTLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVS--- 336
           H + L+ Q L +L  +   ++  +++ PS  +    ++  + N   + +  + +      
Sbjct: 246 HVVYLSRQALDILVALHTCAAGSKFVLPSRYDSDRCMSHATLNRVTQIVAQRAKAAGLPL 305

Query: 337 -----HGLRALASTTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSS 391
                H LR   ST LNE GFN D IE  LAH +    R  YN+AEY EQRR ++  W+S
Sbjct: 306 EPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHMLQEWAS 365

Query: 392 HI 393
            +
Sbjct: 366 MV 367