Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  160 bits (404), Expect = 9e-44
 Identities = 112/400 (28%), Positives = 188/400 (47%), Gaps = 24/400 (6%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCF--PD 65
           LT+T +K  K     Y ++D DG+ + V   GT  +  +Y + +  +R  ++ G +    
Sbjct: 2   LTDTALKNLKPKAAPYKVTDRDGMYVTVSPVGTVTF--RYDYRMNGRRETLTIGRYGADG 59

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           +SLA AR+R  +A+  ++    P Q K  +  K R      F +++DRW   K   +   
Sbjct: 60  LSLARARERCIDARRAVSDGKSPAQEKQRE--KRRLSEAKNFQEFTDRWA--KGARMADS 115

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
           T       L++ ILP   N  + +I    +  +   VK +G   T   +  I+ ++   A
Sbjct: 116 TRSMRKSILDRDILPAFKNRLLTEITSDDLRDLCNKVKGRGAPATAVHVRDIVKQIYGFA 175

Query: 186 VASGDIEVNYLADITKLFPA---PKRQHMVTIEPERLPELMQAIAN-ANITLATRCLLEW 241
           +  G+   N   D+     A   PK + +  +E   + + ++ +A+   I LA R +L  
Sbjct: 176 ILHGEKVANPADDVGPSSIATFVPKDRALSPVEIRLMHQQLETVASYPTIRLALRLILL- 234

Query: 242 QLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSH 301
              T+ R  E   A W +IDF+N +W IP ERMK  + H + L++Q L ++  ++  +  
Sbjct: 235 ---TLVRKGELIHATWNEIDFENALWTIPKERMKGSKAHNVYLSQQALDIMVALRTCAGG 291

Query: 302 REYIFPSNKNPKSHVNSQSANMALKRMGYKGQ--------LVSHGLRALASTTLNEQGFN 353
             ++ PS   P   +++ + N   + +  + +           H LR   ST LNE GFN
Sbjct: 292 SRFVLPSRYEPDKCMSNATLNRVTQLVAARAKEKGLPLDGFTVHDLRRTGSTILNELGFN 351

Query: 354 PDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
            D IE  LAH D    R  YN+AEY EQRR ++  W+  I
Sbjct: 352 SDWIEKCLAHEDGRSSRGVYNKAEYAEQRRHMLQEWADMI 391