Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score =  276 bits (706), Expect = 8e-79
 Identities = 143/388 (36%), Positives = 224/388 (57%), Gaps = 2/388 (0%)

Query: 6   VPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD 65
           +PL + QV+ AK  +K YTL DG GL L ++  G+K W  +Y      K   ISFG +P 
Sbjct: 1   MPLNDMQVRSAKPEEKPYTLGDGLGLSLLIEPTGSKSWRFRYR--FGGKPKMISFGAYPL 58

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           VSLAEARK+R EA+  +   I+P +H+  Q L   +E ENTF   +  W ++K       
Sbjct: 59  VSLAEARKKRDEARKQVLDGINPSEHRKAQKLNLMSESENTFEIIAREWHSMKSARWSTG 118

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A     A    I P +G   I +IKP  +L++L  ++ +G LE +K++ +  +EV R A
Sbjct: 119 YASDIMEAFRNDIFPYVGKRAIAEIKPLELLNVLRKMEKRGALEKMKKVRQRCSEVFRYA 178

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           +A+G  E+N  AD+T +    K QH   ++ + +P  +QA+ +   ++  +   +  + T
Sbjct: 179 IATGRAEINPAADLTSVLTTHKAQHYPFLKADEIPAFIQAVESYTGSVLVQIAAKLLMLT 238

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
             R IE  +A W + D ++ +W +PAERMK +R H +PL+ Q L+LL  ++ IS + +Y+
Sbjct: 239 GVRTIELRSAEWSEFDLEHAIWEVPAERMKKRRSHLVPLSTQALSLLSQLQTISGNYKYV 298

Query: 306 FPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVD 365
           FP   +P   ++  S N  +K +GY+G+L  HG R   ST L+EQG++   IE  LAHVD
Sbjct: 299 FPGRNDPNKPMSEGSINRMIKHIGYEGRLTGHGFRHTMSTILHEQGYDSAWIEMQLAHVD 358

Query: 366 KNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           KN +R  YN A YL+ R K++ W+S ++
Sbjct: 359 KNSIRGTYNHALYLDGRAKMLQWYSDYL 386