Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., tyrosine-type recombinase/integrase from Serratia liquefaciens MT49

 Score =  335 bits (859), Expect = 1e-96
 Identities = 167/399 (41%), Positives = 254/399 (63%), Gaps = 6/399 (1%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKT---NGTKLWILKYTHPITKKRNN 57
           MAK    LT+T++K  K ++KE  L DGDGL LR+      G K W  +Y  P+TKKR  
Sbjct: 1   MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK 60

Query: 58  ISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLT- 116
           +S G +P ++LA+AR  R E  +LLA  IDP+ H  ++    +   E+TF   + +WL  
Sbjct: 61  VSLGTYPHLTLAKARALRDEYLSLLANGIDPQVHNTQKANALKEATEHTFQAVAKKWLDE 120

Query: 117 -LKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLC 175
            +K   +  + A+  +R+LE++I P LG+ PI++I+P+ +   L+P++ +G LET++R+ 
Sbjct: 121 KVKTSGISQDHANDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRII 180

Query: 176 RIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLAT 235
             +NE+ R A     IE N   ++ + F  PK+Q+M  + P  LP  +  + NA++ + T
Sbjct: 181 SRLNEIFRWAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLKNASVRMET 240

Query: 236 RCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIM 295
           R L+EWQL T  RP E+   RW DID  N +W IPAE MKMK+PH +PL+++ L ++E M
Sbjct: 241 RLLIEWQLLTWVRPGEAVRTRWADIDTDNSMWNIPAEFMKMKKPHKVPLSKEALRVIESM 300

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQG-FNP 354
           K IS +RE++FPS K P +H++ Q+AN A+ RMG+ G+LV+HG+R++A T   E   F  
Sbjct: 301 KSISGNREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESSKFRT 360

Query: 355 DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           +++EAALAH  K+E+  AYNRAE L +R  LM WWS ++
Sbjct: 361 EVLEAALAHSKKDEIIAAYNRAECLAERVVLMQWWSDYV 399