Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Phage integrase, Phage P4-associated from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  296 bits (757), Expect = 8e-85
 Identities = 147/343 (42%), Positives = 219/343 (63%), Gaps = 2/343 (0%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           M  ++ PLTN ++  AK    +Y L DG+GL L VKT+G K W  +Y HP+TKKR   S 
Sbjct: 1   MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL 60

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +P V+LA AR+ R++ + LL   IDP+QH      ++R + E T  K +++WL  K+ 
Sbjct: 61  GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR 120

Query: 121 S--VKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRII 178
           +  +  + A   +R+LE H+ P LGN P+ +I+P+ +   L P++ QG LET++R+   +
Sbjct: 121 TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL 180

Query: 179 NEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCL 238
           NE+ R A++   IE N   ++   F  PK+Q+M  + P  L  LM A+ NA+I   TRCL
Sbjct: 181 NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL 240

Query: 239 LEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPI 298
           +EW+L T  RP E+ +ARW DID K   W IP   MKM R HT+PL++Q L +L+IM+P+
Sbjct: 241 IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV 300

Query: 299 SSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRA 341
           S HR ++FPS + P  H++ Q+AN AL RMG+ G+LV+HG+R+
Sbjct: 301 SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRS 343