Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  186 bits (473), Expect = 8e-52
 Identities = 125/392 (31%), Positives = 201/392 (51%), Gaps = 9/392 (2%)

Query: 7   PLTNTQVKQAKESDKEYTLSDG--DGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFP 64
           PLT   +  A+  DK Y L+D    GL L V  NG+K W  +Y   + K+    + G +P
Sbjct: 5   PLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW--LNKREFLQAIGVYP 62

Query: 65  DVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKP 124
            ++L EAR+R +E+++L+A  I+P +   ++   +   +   F K ++ W   +      
Sbjct: 63  LITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSE 122

Query: 125 ETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRL 184
             A +   ALEK + P LG   I DI  R VL++L+  K +   E  ++L R I E+ + 
Sbjct: 123 SYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRIGEIFKF 181

Query: 185 AVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLH 244
           AV +  +  N +AD+     A +  H   I    +P   +A+  A  ++  +  +   + 
Sbjct: 182 AVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAG-SVQIQTAIRLLIL 240

Query: 245 TMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREY 304
           T  R  E    RW+ I+ ++    +PAE MK +RPH +PL+ Q + LL+     S +  +
Sbjct: 241 TALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAF 300

Query: 305 IFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQG-FNPDIIEAALAH 363
           +FP     K  +++ +   AL+R+GYK     HG R   ST LNE G ++PD IE  LAH
Sbjct: 301 VFPGRFMDKP-LSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAH 359

Query: 364 VDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
           V K  +R  YN+A YL+QRR +M  ++  I S
Sbjct: 360 VPKG-IRGVYNQAAYLKQRRAMMQDYADAIDS 390