Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  218 bits (554), Expect = 3e-61
 Identities = 129/402 (32%), Positives = 216/402 (53%), Gaps = 20/402 (4%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ +V+  K SDK + L+DG G+ L +  NG+K W L+Y      K+  ++ G +P VS
Sbjct: 3   LTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYR--FGGKQKVLALGVYPMVS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L EAR++R EAK L++  IDP + K    +++   L  TF   +  W T  +       +
Sbjct: 61  LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEAL--TFEAVARDWHTACKRKWSDSHS 118

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
           ++  +++E  +   +G   I ++  R +L+ ++ V+A G LE   RL +    VMR AV 
Sbjct: 119 ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ 178

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G I+ N   ++       KR H   +  ER  EL++ I +      T+  ++  L    
Sbjct: 179 NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRKLTKLAVKLTLLIFI 238

Query: 248 RPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLEIM 295
           R  E   ARW +IDF N +W IPAER             KM+ PH +PL+ Q LA+L  +
Sbjct: 239 RSSELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEI 298

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKG--QLVSHGLRALASTTLNEQG-F 352
           K IS   E +F  + + +  ++  + N AL+ MGY    ++  HG RA+A + L E G +
Sbjct: 299 KEISGDHELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGLW 358

Query: 353 NPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
           + D +E  ++H ++N VR AY ++AE+L++R+ ++ WW+ ++
Sbjct: 359 SKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYL 400