Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., integrase domain-containing protein from Erwinia tracheiphila SCR3

 Score =  428 bits (1101), Expect = e-124
 Identities = 210/405 (51%), Positives = 291/405 (71%), Gaps = 1/405 (0%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA++  PL NT+VK +K +++   L DGDGL+L VK  G+KLW  +Y  P T+KR  ISF
Sbjct: 1   MARQTKPLNNTEVKNSKATERATILYDGDGLELLVKPGGSKLWRFRYYKPFTRKRAMISF 60

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120
           G +P VSL+EAR+ R +A+ LL+ +IDP++HK  + L++++  E+TF K +  W   K  
Sbjct: 61  GAYPAVSLSEARQLREDARLLLSKDIDPQEHKKTEQLRQKSATESTFEKVAGDWFKTKES 120

Query: 121 S-VKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIIN 179
           + +   T +  +R++ K++ P +G++PI +I  +  +  LEP  A G LETVKRL + IN
Sbjct: 121 AGLATHTLNDIWRSMSKYVFPHIGSMPIANITVQQFIGALEPTHAAGRLETVKRLSQRIN 180

Query: 180 EVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLL 239
           EVM  A+ SG + VN  A I + F  PK +H   + PE+LP LM+ +A A+I   TRCL+
Sbjct: 181 EVMDYALNSGLVSVNPAARIGRTFHKPKVKHRPALPPEQLPLLMKTLAFASIGRQTRCLI 240

Query: 240 EWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPIS 299
           EWQL TM RP E++T RW +IDF  K W IPA RMKMKR H +PL+EQ LA+LE+MKPIS
Sbjct: 241 EWQLLTMIRPAEASTTRWDEIDFAAKEWRIPAGRMKMKREHIVPLSEQALAILEVMKPIS 300

Query: 300 SHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEA 359
            HR+Y+FP  +NP   +NSQ+ANMALKRMG+K  LV+HG+RA+AST LNE+GF PD+IEA
Sbjct: 301 KHRDYVFPGYRNPLEPMNSQTANMALKRMGFKDLLVAHGMRAIASTVLNEKGFPPDVIEA 360

Query: 360 ALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLA 404
           ALAH+D NEVR+AYNRA+YLEQRR++MSWW  ++ +AS  N+S++
Sbjct: 361 ALAHIDTNEVRRAYNRAQYLEQRREMMSWWGQYVEAASFGNSSIS 405