Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  190 bits (483), Expect = 6e-53
 Identities = 125/403 (31%), Positives = 205/403 (50%), Gaps = 25/403 (6%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+++ K AK  +KEY L+DG G+ LRV   G+K W + Y      K+   S G +P VS
Sbjct: 3   LTDSKAKNAKPLEKEYKLTDGFGMFLRVIPKGSKYWQMAYR--FEGKQKLFSIGVYPAVS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQL--LKERAELENTFGKYSDRWLTLKRESVKPE 125
           LA+AR+RR EA+ LLA  IDP   K  ++  LK + +   +F   +  W + K +  + +
Sbjct: 61  LADARQRRDEARRLLAQGIDPNARKQAEVKELKAKRDKTRSFSIVAKAWFSTKTKWSE-D 119

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
             D  ++ LE ++ P  G+  + ++    +   ++ V+A G LE   R+ + I  ++R A
Sbjct: 120 YGDSVWKRLETYVFPATGDKDVAELDTGNLPVPVKKVEALGYLEVAMRIQQYITAILRHA 179

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           V    I  N   D+      P  +H   +E E +P+L++ IA       T   ++  L  
Sbjct: 180 VQQKLIRHNPAYDMEGAVQKPHTEHRPALELEEIPQLLKKIAGYKGRRLTILAIQLNLMI 239

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLE 293
             R  E   ARW +ID K+K+WVIP +R             KMKR H +PL +Q + +L+
Sbjct: 240 FIRSSELRFARWSEIDVKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAMKILK 299

Query: 294 IMKPISSHREY----IFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTL 347
            ++ ++    +    IF    +    ++  + N AL+ MGY  K  +  HG R L    L
Sbjct: 300 EIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLDVVAL 359

Query: 348 NEQG-FNPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSW 388
            E G ++ D +E  ++H + N VR AY ++A + +QRR ++ W
Sbjct: 360 IESGLWSEDAVELQMSHKESNSVRAAYTHKARHPDQRRLMLQW 402