Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  155 bits (391), Expect = 3e-42
 Identities = 123/415 (29%), Positives = 186/415 (44%), Gaps = 46/415 (11%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKT-NGTKLWILKYTHPITKKRNNISFGCFPDV 66
           LT+T+ +  K  D+        GL L   +  G   W+L+Y  P+T+KR N   G +P++
Sbjct: 4   LTDTKARHIKPDDRPLPHGGITGLTLHPSSVKGRGKWVLRYVSPVTQKRRNAGLGTYPEI 63

Query: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKE-----RAELENTFGKYSDRWLTLKRES 121
            +AEA +     +  LA   DP + K  +  K       A       + S  W   K   
Sbjct: 64  GIAEAARMAQAMREQLATGDDPLELKKAEAEKVVIPTFEAAARQVHAELSPGWKNQKHIK 123

Query: 122 VKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEV 181
               T       LE++  P LG  P+  I P  V   L PV      ET  R+ + I+ V
Sbjct: 124 QWLST-------LEQYAFPSLGTKPLDRITPADVAETLRPVWLT-LAETASRVKQRIHAV 175

Query: 182 MRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITL-------- 233
           M+     G    N +  +  L P    Q  + +  E  P    A+   N+ L        
Sbjct: 176 MQWGWTHGHCVANPVDVVDHLLPV---QAGINVRTEHQP----AMPWRNVPLYVATKVYS 228

Query: 234 -----ATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQT 288
                 TR LL   + T  R  E+   RWQ++D   ++W++P ERMK    H +PL+ Q 
Sbjct: 229 DERYNVTRALLLIVILTGARSGEARGMRWQEVDLDKRIWIVPPERMKAGIQHRVPLSLQA 288

Query: 289 LALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMA--LKRMGY----KGQLVS-HGLRA 341
           +A+LE M+ +  H E +FPS   P+  +      M   L++ G      G+L + HG R+
Sbjct: 289 VAVLEKMQGL--HDELVFPS---PRKQIVLSDMVMTTFLRKTGAVSDTPGRLATAHGFRS 343

Query: 342 LASTTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSA 396
                 +EQG + D+ E ALAH  KN+V  AY+R + LEQR  +M  W+ ++ SA
Sbjct: 344 SFRDWCSEQGISRDVAERALAHTLKNKVEAAYHRTDLLEQRIPVMQAWADYVFSA 398