Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  207 bits (527), Expect = 4e-58
 Identities = 115/390 (29%), Positives = 206/390 (52%), Gaps = 9/390 (2%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT  Q+  AK  DK Y L D +GL L V  +G K+W L+Y   I  K   ++ G +P +S
Sbjct: 2   LTIKQIDAAKPKDKPYRLLDSNGLYLYVPASGKKVWQLRYK--IDGKEKVLTVGKYPLMS 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L EAR +   A+  +++ IDP +       K+ +  +N+FG     W   K++      A
Sbjct: 60  LQEARDKAWLARKDVSVGIDPVK------AKKLSVKDNSFGAIYHEWYEHKKQVWSLGYA 113

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
           ++  R     ILP +G + I +I+P  +L ++   + +G +E   +  R   EV R A+ 
Sbjct: 114 EELARMFRDDILPMIGGLEINEIEPMKILEVIRRFEERGAMERANKARRRCGEVFRYAIV 173

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G  + N   D+       ++Q+   +  +++P   +A+A  + ++ +R   +   +T  
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKQNYPFLPADQIPAFNRALAGYSGSIVSRIATQILQYTAL 233

Query: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSH-REYIF 306
           R  E  + +W ++DF  +   I AE MK +R H +P+++Q ++LLE+++PI++    ++F
Sbjct: 234 RTKELRSMQWANVDFATRTITIAAEVMKGRRIHIVPMSDQVISLLEMLRPITAPVSAFVF 293

Query: 307 PSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDK 366
               + K  ++  +  + ++++GY+G    HG R   ST +NE  +  D IE  LAH D 
Sbjct: 294 AGRNDKKKPISENAVLLVIRQIGYEGLASGHGFRHQFSTIMNENEWPHDAIERQLAHTDS 353

Query: 367 NEVRKAYNRAEYLEQRRKLMSWWSSHITSA 396
             +R  YN A+YLE+RR++M WW+  +  A
Sbjct: 354 GSIRGIYNHAQYLEKRREMMQWWADWLDGA 383