Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  242 bits (617), Expect = 2e-68
 Identities = 143/402 (35%), Positives = 216/402 (53%), Gaps = 18/402 (4%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT  QV+ AK  DK Y L+DG GL L V   G+K W +KY  P  KK + ++FG +P VS
Sbjct: 3   LTARQVETAKPKDKAYKLADGMGLYLEVTPRGSKYWRMKYRRPSDKKEDRLAFGVWPAVS 62

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR +R +AK LLA   DPK   +++  +  AE   TF   + +W     +   P  A
Sbjct: 63  LADARAKRDDAKRLLAKGFDPK--AEQKGAQAEAEGAYTFETITRQWYGGCLKRWTPTHA 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
               R+LE ++ P +G   I+ +K R +L+ +    +    +  KRL + I  VMR AV 
Sbjct: 121 RAVLRSLEHYVFPHIGGADIRQLKTRQLLAAVNSADSANKHDVAKRLRQRITSVMRYAVQ 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G I+ N   D+     + K +H  T+   R  EL+  I+N +    TR  +E  L T  
Sbjct: 181 NGLIDSNPALDMAGAVESAKTKHRPTLPHARFGELLSRISNYSGRPVTRLAVELTLLTFL 240

Query: 248 RPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLEIM 295
           R  E   A W + DF   VW +PA+R            MKM  PH +PL++Q LALLE +
Sbjct: 241 RSSELRFAWWDEFDFDRAVWNVPAKRPEIEGVRYSWRGMKMGTPHVVPLSKQALALLEEL 300

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTLNEQG-F 352
           K  S +   +FP + NP+  ++  + N AL+ MGY  K +   HG R +A   + E G +
Sbjct: 301 KEFSGNNSRLFPGDHNPQQVMSENTVNKALRTMGYDTKTEACGHGFRTMACGAMAESGLW 360

Query: 353 NPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
           + + +E  ++H ++N+VR  Y + AEYLE+RR +M WW+ ++
Sbjct: 361 SREAVEMQMSHQERNDVRAPYVHTAEYLEERRLMMQWWADYL 402