Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., prophage integrase IntS from Escherichia coli ECRC62

 Score =  195 bits (495), Expect = 2e-54
 Identities = 112/387 (28%), Positives = 203/387 (52%), Gaps = 15/387 (3%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT  Q++ AK  +K Y L DG+GL L V  +G K+W L+Y   I  K   ++ G +P ++
Sbjct: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L EAR +   A+  +++ IDP +       K+ +   N+F      W   K++      A
Sbjct: 60  LQEARDKAWTARKDISVGIDPVK------AKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
            +  +  +  ILP +G + IQDI+P  +L ++   + +G +E   +  R   EV R A+ 
Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G  + N   D+       ++++   +  +++P   +A+A  + ++ +    +   +T  
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233

Query: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALL----EIMKPISSHRE 303
           R  E  + +W+++DF+N++  I A  MK ++ H +P+++Q + LL     I KP+S   E
Sbjct: 234 RTKELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290

Query: 304 YIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAH 363
           ++F    + K  +   +  + +K++GY+G    HG R   ST +NE  +  D IE  LAH
Sbjct: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350

Query: 364 VDKNEVRKAYNRAEYLEQRRKLMSWWS 390
            +   VR  YN A+YL++RR++M WW+
Sbjct: 351 ANGGSVRGIYNHAQYLDKRREMMQWWA 377