Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Prophage integrase IntZ from Escherichia coli ECRC62

 Score =  166 bits (421), Expect = 8e-46
 Identities = 110/347 (31%), Positives = 178/347 (51%), Gaps = 11/347 (3%)

Query: 53  KKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSD 112
           KK    + G +P +SL EARKR +E+++L+A  I+P +   ++   +   +   F   ++
Sbjct: 3   KKEYLQAIGVYPLISLKEARKRATESRSLIANGINPVEEARKEKAIDALNMAAGFKTVAE 62

Query: 113 RWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVK 172
            WL  +          +   ALEK + P LG   I DI  R VL++L+  K +   E  +
Sbjct: 63  DWLATRVSGWSESYTKQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQAR 121

Query: 173 RLCRIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANA--- 229
           +L + I E+ + AV +  +  N +AD+     A +  H   ++   +P   +A+  A   
Sbjct: 122 KLRQRIGEIFKFAVITELVNRNPVADLDSALKARRPGHNAWLQISEIPPFYKALERAGSV 181

Query: 230 NITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTL 289
            I  A R L+   L T     E    RW+ +D ++    +PAE MK +RPH +PL+ Q +
Sbjct: 182 QIQTAIRLLILSALRT----AELRLMRWEWVDLESATITLPAEVMKARRPHVVPLSRQAV 237

Query: 290 ALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNE 349
            LL+     S +  ++FP     K  +++ +   AL+R+G+K  +  HG R   ST LNE
Sbjct: 238 ELLQDQFTRSGYSAFVFPGRFMDKP-LSASAILKALERIGFKSTVTGHGWRTTFSTALNE 296

Query: 350 QG-FNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
            G +NPD +E  LAHV K  +R  YN+A YL+QRR +M  ++  I S
Sbjct: 297 SGRYNPDWVEIQLAHVPKG-IRAVYNQAAYLKQRRAMMQDYADAIDS 342