Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase from Escherichia coli ECRC62

 Score =  344 bits (882), Expect = 3e-99
 Identities = 169/401 (42%), Positives = 259/401 (64%), Gaps = 6/401 (1%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKT---NGTKLWILKYTHPITKKRNN 57
           MAK    LT+T++K  K +DKE  L DGDGL LR+      G K W  +Y  P++KKR  
Sbjct: 1   MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK 60

Query: 58  ISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLT- 116
           +S G +P ++LA+AR  R E  +LLA  +DP+ H + +    ++ +E+T    + +WL  
Sbjct: 61  MSLGTYPHLTLAKARALRDENLSLLANGVDPQVHNNNKAKALKSAIEHTLQAVARKWLDE 120

Query: 117 -LKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLC 175
            +K   +  + A+  +R+LE++I P LG+ PI++I+P+ +   L+P++ +G LET++R+ 
Sbjct: 121 KVKTSGISQDHAEDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRII 180

Query: 176 RIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLAT 235
             +NE+ R A     IE N   ++ + F  PK+Q+M  + P  LP  +  + NA++ + T
Sbjct: 181 SRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLNNASVRMET 240

Query: 236 RCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIM 295
           R L+EWQL T  RP E+   RW DID +  +W IPAE MKMK+PH +PL+++ L +L++M
Sbjct: 241 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 300

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQG-FNP 354
           K IS HRE++FPS K P +H++ Q+AN A+ RMG+ G+LV+HG+R++A T   E G F  
Sbjct: 301 KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 360

Query: 355 DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITS 395
           D++EAALAH  K+E+  AYNRAEYL +R  LM WWS  ++S
Sbjct: 361 DVLEAALAHSKKDEIIAAYNRAEYLTERVILMQWWSDFVSS 401