Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., integrase from Escherichia coli ECRC62

 Score =  276 bits (706), Expect = 8e-79
 Identities = 149/390 (38%), Positives = 218/390 (55%), Gaps = 2/390 (0%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT  QV+ A+  +K+Y LSD  GL L VKT G + W LKY   I  K   ++ G +PDVS
Sbjct: 3   LTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYR--IAGKEKKLALGVYPDVS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LAEAR +R +A+ +++   DP + K ++ L ++    NTF   +  W   K  S     A
Sbjct: 61  LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
                AL+K I P LG   + DI P  +L IL  ++ +G+LE ++++ +  N++ R A+A
Sbjct: 121 RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G   VN  +++T    APK  H   +  + LP  ++ +A  + +  TR      L T  
Sbjct: 181 TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTRMATNLLLLTGL 240

Query: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFP 307
           R IE  +A W +IDF N +W IP  RMKM+R H +PL+ Q   +L  +K  S     +FP
Sbjct: 241 RTIELRSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP 300

Query: 308 SNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDKN 367
              +    ++  S NM LKR+GY G+   HG R   ST L+EQGFN   IE  LAHVDKN
Sbjct: 301 GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 368 EVRKAYNRAEYLEQRRKLMSWWSSHITSAS 397
            +R  YN A+YL+ RR++M W++ +I S S
Sbjct: 361 AIRGTYNHAQYLDGRREMMQWYADYIDSLS 390