Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., integrase from Escherichia coli ECRC101

 Score =  218 bits (555), Expect = 3e-61
 Identities = 132/402 (32%), Positives = 215/402 (53%), Gaps = 21/402 (5%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ +++ AK +DK Y L+DG G+ L V  NG++ W L+Y   I  K   ++   +P+VS
Sbjct: 3   LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALVVYPEVS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L+EAR +R EA+ L++  +DP + K  +  K   +L+ +F   + RW    ++  +  + 
Sbjct: 61  LSEARTKRDEARKLISEGVDPCEQKRAK--KVVPDLQLSFEHIARRWHASNKQWAQSHS- 117

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
           DK  ++LE H+ P +GN  I  +    +L  +   +A+   E   RL + I+ VMR AV 
Sbjct: 118 DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ 177

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           SG I  N   D+       KRQH   ++  RLPEL+  I +      T+  +   L    
Sbjct: 178 SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI 237

Query: 248 RPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLEIM 295
           R  E   ARW +ID  N +W IPAER             KM+ PH +PL++Q +A+L  +
Sbjct: 238 RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL 297

Query: 296 KPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTLNEQG-F 352
           +  +     IF    +P+  ++  + N AL+ MGY     +  HG RA+A + L E G +
Sbjct: 298 QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW 357

Query: 353 NPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
           + D +E  ++H ++N VR AY ++AE+LE+RR ++ WW+  +
Sbjct: 358 SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL 399