Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., integrase from Escherichia coli ECRC100

 Score =  273 bits (699), Expect = 5e-78
 Identities = 140/388 (36%), Positives = 220/388 (56%), Gaps = 2/388 (0%)

Query: 6   VPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD 65
           +PL + Q+++AK   K YT  DG GL L ++ NG+K W  +Y +    K   IS G +P 
Sbjct: 1   MPLNDMQIRRAKPEAKAYTFGDGLGLSLLIEPNGSKSWRFRYRY--AGKPKMISLGVYPT 58

Query: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125
           ++LA+AR RR EA+ L+A   +P + + EQ L  + E EN F K +  W  LK       
Sbjct: 59  ITLADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAG 118

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A     A +  I P +G  P+ +IKP  +L++L  ++ +G LE ++++ +  +EV R A
Sbjct: 119 YASDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYA 178

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           +A+G  E N  AD++      +  H   ++ + +P+ ++A+   + +   +   +  + T
Sbjct: 179 IATGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMIT 238

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYI 305
             R IE   A WQ+ D  N +W IPAERMKM+RPH +PL+ Q + LL  +K ++ +  Y+
Sbjct: 239 GVRTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYV 298

Query: 306 FPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVD 365
           FP   +P   ++  S N A+KR+GY G++  HG R   ST L+EQGF    IE  LAHVD
Sbjct: 299 FPGRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVD 358

Query: 366 KNEVRKAYNRAEYLEQRRKLMSWWSSHI 393
           KN +R  YN A+Y   R+ +M W+S+ I
Sbjct: 359 KNSIRGTYNHAQYFSGRKSMMDWYSNLI 386