Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score =  236 bits (603), Expect = 7e-67
 Identities = 143/404 (35%), Positives = 222/404 (54%), Gaps = 22/404 (5%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+   + AK  +K Y L+D  GL L V  NG+K W LKY      K + I+FG +P +S
Sbjct: 3   LTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYR--FDGKESRIAFGAYPLIS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAE-LENTFGKYSDRW-LTLKRESVKPE 125
           LA+AR++R E + LL+  I P + ++E+  KE+A+   NTF K +  W   + +      
Sbjct: 61  LAKAREKRDEVRLLLSEGIHPTEKREEE--KEQAQDALNTFEKVARDWHRNISQNRWSQT 118

Query: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185
            A + +R +E++ILP +G   I D+K + +L  L+ V+  G L+   RL + I ++MR A
Sbjct: 119 HAGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRITDIMRYA 178

Query: 186 VASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHT 245
           V +  IE N   D+T    APK  H   ++ ++LP+ +  I        TR  L+  L  
Sbjct: 179 VQNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIERYKGRALTRLALKLTLCV 238

Query: 246 MTRPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLALLE 293
             R  E   ARW +IDFK  +W IP ER             KM+  H +PL+ Q LALLE
Sbjct: 239 FIRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLE 298

Query: 294 IMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY--KGQLVSHGLRALASTTLNEQG 351
            +K IS   E IFP +  P   ++  + N AL+ MGY    ++  HG R +A + L E G
Sbjct: 299 EIKAISGVHELIFPGDHRPTKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESG 358

Query: 352 -FNPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
            ++ D +E  ++H ++N VR AY ++AE+LE+R+ ++ WW+ ++
Sbjct: 359 QWSRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYL 402