Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score =  270 bits (689), Expect = 7e-77
 Identities = 145/395 (36%), Positives = 218/395 (55%), Gaps = 10/395 (2%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L   QV  AK  DK Y LSDG GL L V  NG++ W LKY   +  K   ++ G +P +S
Sbjct: 3   LNARQVDTAKPKDKPYKLSDGGGLYLLVNPNGSRYWRLKYR--VDGKEKLLALGVYPAIS 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR +R EAK  +A  IDP   + E+ +   A+++NTF   +  W   K +      A
Sbjct: 61  LAQARGKRDEAKRGIAGGIDPNVARREEKIAREAQIKNTFQDIALEWHASKIKKWSAGYA 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
                A  K + P +GN PI  IKP  +L++L  ++++G  E  K++ +   EV R A+ 
Sbjct: 121 SDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGATEKAKKVRQRCGEVFRYAIV 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANAN----ITLATRCLLEWQL 243
           +G  E N   D+T      +  H   +  + LPE   A++       + LA R L+    
Sbjct: 181 TGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKLVLLAARLLIL--- 237

Query: 244 HTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHRE 303
            T  R  E   A WQ+ID +N  W IPAERMKM+RPH +PL+ Q +A+L+ ++ ++    
Sbjct: 238 -TGVRTGELRAANWQEIDTENARWEIPAERMKMRRPHCVPLSRQAIAILDEIREMTGRYP 296

Query: 304 YIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAH 363
            +FP   +P++ ++  S N   KR+GY G++  HG R   ST L+EQG+N   IE  LAH
Sbjct: 297 LVFPGRNDPRNTMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAH 356

Query: 364 VDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASN 398
           VDKN +R  YN A+YL+ RR+++ W++ ++ S  N
Sbjct: 357 VDKNAIRGTYNHAQYLDGRREMLQWYADYMESLEN 391