Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score =  429 bits (1104), Expect = e-125
 Identities = 221/415 (53%), Positives = 284/415 (68%), Gaps = 2/415 (0%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60
           MA+   PLTNT++K AK ++KEYTL DGDGL L VK +G+K+W   Y  P TKKR  ISF
Sbjct: 1   MARITTPLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISF 60

Query: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKR- 119
           G FP VSLAEAR+RR  AK L++  IDP+ H+ +Q  +E+A   NTF K +  W  +K+ 
Sbjct: 61  GAFPAVSLAEARQRRESAKALISKGIDPQFHQQQQREQEQAISLNTFAKVAADWYEVKKS 120

Query: 120 ESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIIN 179
           + +   T    +R+LEK++ P + N PI  +  R  ++ LEP++A G LETVKR+ + IN
Sbjct: 121 QQLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVSQRIN 180

Query: 180 EVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLL 239
           EVM  AV SG I  N  A I K F  P + HM TI PE LP LM+ ++ A+I L TR L+
Sbjct: 181 EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI 240

Query: 240 EWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPIS 299
           EWQL T++RP E+A  RW +ID     W IPA RMKM+R H IPL  Q LA+L+ MKPIS
Sbjct: 241 EWQLLTVSRPAEAAETRWSEIDLMQNTWTIPAGRMKMRREHVIPLPPQALAILDAMKPIS 300

Query: 300 SHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEA 359
            HREY+FPS K+PK  +NSQ+AN AL+RMGYKG LVSHGLRA+ ST  NE GF PD+IEA
Sbjct: 301 GHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEA 360

Query: 360 ALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAE-RKVLKLAG 413
           ALAHVD NEVR+AYNR+ YLEQR+ LM WW   + +A+      +E  +VL++ G
Sbjct: 361 ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKAMASEGARVLRVVG 415