Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dadantii 3937

 Score =  230 bits (587), Expect = 5e-65
 Identities = 138/406 (33%), Positives = 215/406 (52%), Gaps = 27/406 (6%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L   QV+ AK  +K Y ++DG GL L +   G+K W +KY  P  KK + ++FG +P V+
Sbjct: 3   LNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPTVT 62

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR +R EAK LL   IDPK  + E      A+ E T G Y+   +  +  +      
Sbjct: 63  LADARAKRDEAKKLLVQGIDPKAEQKE------AQAE-TAGAYTFETIARQWHASNKRWG 115

Query: 128 D----KAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMR 183
           D    +  R LE +I P +G   I+ +K   +L+ ++ V A G  +  +RL + +  +MR
Sbjct: 116 DYHRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMR 175

Query: 184 LAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQL 243
            AV +  I+ N  +D++      K +H   + PERL E +  +A       TR  +E  L
Sbjct: 176 YAVQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTL 235

Query: 244 HTMTRPIESATARWQDIDFKNKVWVIPAER------------MKMKRPHTIPLTEQTLAL 291
            T  R  E   A+W + DF    W +PA+R            MKMK  H +PL+ Q +AL
Sbjct: 236 LTFVRSSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVAL 295

Query: 292 LEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQ--LVSHGLRALASTTLNE 349
           LE +K IS   + +FP + +P+  ++  + N AL+ MGY  Q  +  HG R +A   L E
Sbjct: 296 LEQLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGE 355

Query: 350 QG-FNPDIIEAALAHVDKNEVRKAY-NRAEYLEQRRKLMSWWSSHI 393
            G ++ D IE  L+H ++N VR AY + +EYL++RR ++ WW+ ++
Sbjct: 356 SGLWSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYL 401