Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., putative integrase from Escherichia coli BL21

 Score =  190 bits (482), Expect = 7e-53
 Identities = 118/379 (31%), Positives = 201/379 (53%), Gaps = 21/379 (5%)

Query: 31  LQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQ 90
           + L V  NG+K W L+Y +    K+  ++ G +P+++LA+AR RR E + LLA  +DP  
Sbjct: 1   MHLLVHPNGSKYWRLQYRYE--GKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGD 58

Query: 91  HKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDI 150
            K    +++      TF + +  W    ++  + + A +  ++LE ++   LG   I ++
Sbjct: 59  KKKNDKVEQSKA--RTFKEVAIEWHGTNKKWSE-DHAHRVLKSLEDNLFAALGERNIAEL 115

Query: 151 KPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADITKLFPAPKRQH 210
           K R +L+ ++ V+  G LE   RL +    +MR AV SG I+ N   ++     +  RQH
Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175

Query: 211 MVTIEPERLPELMQAIANANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIP 270
              +E +R+PEL+  I +      TR  +E  L    R  E   ARW +IDF+  +W IP
Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235

Query: 271 AER------------MKMKRPHTIPLTEQTLALLEIMKPISSHREYIFPSNKNPKSHVNS 318
            ER             KM+  H +PL+ Q LA+L+ +K      + IF  + +    ++ 
Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295

Query: 319 QSANMALKRMGY--KGQLVSHGLRALASTTLNEQG-FNPDIIEAALAHVDKNEVRKAY-N 374
            + N AL+ MGY  K ++  HG R +A ++L E G ++ D +E  ++H+ +N VR AY +
Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355

Query: 375 RAEYLEQRRKLMSWWSSHI 393
           +AE+LE+RR ++ WW+  +
Sbjct: 356 KAEHLEERRLMLQWWADFL 374