Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Int from Escherichia coli BL21

 Score =  297 bits (760), Expect = 4e-85
 Identities = 152/391 (38%), Positives = 227/391 (58%), Gaps = 2/391 (0%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ +VK AK  DK Y L+DG G+ L + TNG+K W +KY      K   +S G +PDV+
Sbjct: 3   LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDVT 60

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR++RSEA+ LLA   DP + K E+ + ++  L+NTF   +  W   K +       
Sbjct: 61  LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR 120

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
           D+     EK I P +G  PI +IKP  +L  L  ++ +G LE ++++ +   EV R A+ 
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
           +G  + N   D+      PK+ H   +    LP  +  +A    ++ T+   +  + T  
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240

Query: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFP 307
           R  E   ARW+DIDF+ K+W IPAE MKMKRPH +PL+EQ + L + ++PIS H   +F 
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI 300

Query: 308 SNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDKN 367
              +P+  ++ +S N  ++ +GYKG+L  HG R   ST L+EQGFN   IE  LAHVDKN
Sbjct: 301 GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 368 EVRKAYNRAEYLEQRRKLMSWWSSHITSASN 398
            +R  YN A YL+ RR++M W++ +I S S+
Sbjct: 361 SIRGTYNHALYLDGRREMMQWYADYIDSLSS 391