Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., integrase from Escherichia coli BL21

 Score =  138 bits (347), Expect = 2e-37
 Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 17/276 (6%)

Query: 35  VKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDE 94
           V  N ++ W L+Y   I  K   ++ G +P+VSL+EAR +R EA+ L++  IDP + K  
Sbjct: 5   VHPNSSRYWRLRYR--ILGKEKTLALGVYPEVSLSEARAKRDEARKLISAGIDPCEQKRA 62

Query: 95  QLLKERAELENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRT 154
           +  K   +L+ +F   + RW    ++  +  + DK  ++LE H+ P +GN  I  +    
Sbjct: 63  K--KVVPDLQLSFEHIARRWHASNKQWTQSHS-DKVLKSLETHVFPFIGNRDITKLNTPD 119

Query: 155 VLSILEPVKAQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTI 214
           +L  +   +A+   E   RL + I+ VMR AV SG I  N   D+       KRQH   +
Sbjct: 120 LLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL 179

Query: 215 EPERLPELMQAIANANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAER- 273
           +  RLPEL+  I +      TR  +   L    R  E   ARW +ID +N +W IPAER 
Sbjct: 180 DLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIENAMWTIPAERE 239

Query: 274 -----------MKMKRPHTIPLTEQTLALLEIMKPI 298
                       KM+ PH +PL++Q +  L    P+
Sbjct: 240 PLPGVNFSHRGSKMRTPHLVPLSKQAVPSLPPAFPV 275