Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  140 bits (352), Expect = 9e-38
 Identities = 105/373 (28%), Positives = 177/373 (47%), Gaps = 24/373 (6%)

Query: 27  DGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALNI 86
           DG GL L V  +G K W+  Y    + +   +  G    V+LA+AR+   +A+T L   +
Sbjct: 24  DGGGLYLVVDKSGAKRWVFLYRR--SDRLREMGLGGVHSVTLAKARELAQDARTKLQAGV 81

Query: 87  DPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVP 146
           DP Q K          L  TFG  +D ++   +   +       +    +     L    
Sbjct: 82  DPIQAKHTA-----PPLVPTFGDEADDFIAAMKPQFRNAKHVAQWEMTLREYAAPLRQKL 136

Query: 147 IQDIKPRTVLSILEPV---KAQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADITKLF 203
           I ++    VL +L+P+   K++       R+ R+++      + +G+    +   + KL 
Sbjct: 137 ITEVTTADVLGVLKPIWLTKSETASRVRGRIERVLDAAKAKGLRTGENPALWRGHLDKLL 196

Query: 204 PAPKRQHMVTIEPERLPELMQAIANANITLATR-----CLLEWQLHTMTRPIESATARWQ 258
           P  KR+ +     + +P     +A   I L  R       LE+ + T  R  E+  A+W 
Sbjct: 197 P--KRRKLARGHHKAMP--YADVAAFIIELRKREAVAATALEFTILTAARSGETLGAKWH 252

Query: 259 DIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPI-SSHREYIFPSNKNPKSHVN 317
           +ID+K+K+W +PAERMK  R H +PL+ +T+ +L+ +    S    ++FP  K P   ++
Sbjct: 253 EIDWKDKIWTVPAERMKAAREHRVPLSSRTITILKKLAEFGSDENSFVFPGQK-PGKPLS 311

Query: 318 SQSANMALKRMGYKGQLVSHGLRALASTTLNE-QGFNPDIIEAALAHVDKNEVRKAYNRA 376
             + +M L+RM  +  +  HG R+       E   F  D+ EAALAHV  ++  +AY R 
Sbjct: 312 VMAMDMVLRRM--EVDVTVHGFRSSFRDWCGEVSNFPRDVAEAALAHVVGDKTERAYRRG 369

Query: 377 EYLEQRRKLMSWW 389
           + LE+RRKLM+ W
Sbjct: 370 DALEKRRKLMAAW 382