Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score =  227 bits (578), Expect = 5e-64
 Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 5/391 (1%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           LT+ +V++ K  +K+   SD  G+ L V  +G   W +K+      K N  S G +P+ S
Sbjct: 2   LTDVKVRKLKPLEKKARYSDEKGMYLEVTPSGGMYWRMKFR--FNGKENIFSIGTYPETS 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           LA+AR+ R EA+  L   I+P + K ++  K++A+    F   +  W+  ++  +K  T 
Sbjct: 60  LAQARRIRDEARLKLKDGINPNEAKKQK--KQQADENMLFKALAMEWMEDRKAVIKENTY 117

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVA 187
            +     EK + P LGN+PI  I+ + VL+  + ++ +G  E  KR   +   + R A+ 
Sbjct: 118 LRDLSVFEKDLFPTLGNMPIDQIRGKDVLACAKKIEERGAQEMAKRSIPLAGRIFRFAIR 177

Query: 188 SGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMT 247
            G IE +    + +     K +HM  ++    P  ++ +   +     +  ++    T  
Sbjct: 178 KGLIENDPTPHLQEALKPRKVKHMARLDISEFPPFLERMDRYHGNPMIKTAIQLMTLTFV 237

Query: 248 RPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFP 307
           R  E     W +IDF   +W IPAE+MKM +PH +PL++Q +AL+E ++P++ +++Y+F 
Sbjct: 238 RTAELRMMEWSEIDFDTHLWRIPAEKMKMAQPHIVPLSKQAIALIEGLRPLTGNKQYVFY 297

Query: 308 SNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDKN 367
           ++   K  ++S +    ++ MGY G++  HG R LASTTL+EQG+  D IE  LAH   N
Sbjct: 298 NHSTAKP-MSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGN 356

Query: 368 EVRKAYNRAEYLEQRRKLMSWWSSHITSASN 398
            V +AYN A++LE R K+M  WS  I    N
Sbjct: 357 AVSQAYNHAQHLEYRIKMMQEWSDFIDILRN 387