Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  193 bits (490), Expect = 9e-54
 Identities = 126/407 (30%), Positives = 211/407 (51%), Gaps = 18/407 (4%)

Query: 1   MAKRVVPLTNTQVKQAKES---------DKEYTLSDGDGLQLRVKTNGTKLWILKYTHPI 51
           M K+V+ LT++++K               K+  LSDG GL L ++ NGT +W   YT P+
Sbjct: 1   MPKQVISLTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPV 60

Query: 52  TKKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYS 111
           +KKRN ++ G +P +SLA+AR+ R + + LLA   DP+  K     KER + + TF   +
Sbjct: 61  SKKRNTMTVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVA 120

Query: 112 DRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETV 171
           + + + +R +   E   K    + + +   +GN+PI DI PR +  ++E  + +G +E+ 
Sbjct: 121 ELYKSKQRLA---EATVKRNDGIFEKLYRDVGNMPISDITPRDLAKVIEKDENKGHIESA 177

Query: 172 KRLCRIINEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTI-EPERLPELMQAIANAN 230
            R+    ++V R AV  G  E +   D+       ++ H   + +P     L+  I +  
Sbjct: 178 MRIRSKASQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYE 237

Query: 231 ITLA-TRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKR--PHTIPLTEQ 287
             L   +  L+       R  E   A+W DI+F+   W     +   K    H +PL+ Q
Sbjct: 238 SQLVHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQ 297

Query: 288 TLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGY-KGQLVSHGLRALASTT 346
            +A+L+     +++ +++FPS  +    ++  S NMAL+RMGY K  +  HG RA+A T 
Sbjct: 298 AIAILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTL 357

Query: 347 LNE-QGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSH 392
           L+E   F  DIIE  LAH  ++   +AYNR ++L++RR +M  WS +
Sbjct: 358 LDEVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDY 404