Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  144 bits (363), Expect = 5e-39
 Identities = 119/423 (28%), Positives = 211/423 (49%), Gaps = 39/423 (9%)

Query: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYT--------HPIT 52
           M K+   L+   V + K + + +++   DGL L V+ N +++WIL+            + 
Sbjct: 1   MPKKSKELSALSVAKIKNTGR-HSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKLK 58

Query: 53  KKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAEL--ENTFGKY 110
             R +I  G +P+VSLAEAR + +E +  +   IDP  HK EQL K   +   + TF + 
Sbjct: 59  PHRRDIGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMEC 118

Query: 111 SDRWLTLKRESVKPETADKAYRA-LEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLE 169
           +   +  K   +K E     + + LE +I P LG++ I  I    +  +L P+  +   E
Sbjct: 119 AKVVIANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIKKN-E 177

Query: 170 TVKRLCRIINEVMRLAVA----SGDIEVNYLADITKLFPAPKRQHMV--TIEPERLPELM 223
           T KR+   I  +   A A     GD    +  ++  +F   K++     ++  E++   +
Sbjct: 178 TAKRIRGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFI 237

Query: 224 QAIANANITLATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIP 283
           Q +      ++ + L E+ + T  R  E   A+WQ+IDFKNKVW+IP ERMK  + H +P
Sbjct: 238 QHLRQKK-GISPKAL-EFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVP 295

Query: 284 LTEQTLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRM----------GY--- 330
           L+++ + LL+ ++  +  +++IFP+ +N  + ++  S  + +KRM          GY   
Sbjct: 296 LSQEAVNLLKSIQEYTQPQDFIFPAPRN-GAMLSDMSLTILIKRMHEQKLKENGLGYIDP 354

Query: 331 --KGQLVSHGLRA-LASTTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMS 387
                + +HG R+     + ++  +  ++ E  LAH   +EV  AY R  YLE+R+ LM+
Sbjct: 355 KQNRVITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMA 414

Query: 388 WWS 390
            W+
Sbjct: 415 DWA 417