Pairwise Alignments

Query, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score =  161 bits (408), Expect = 3e-44
 Identities = 116/399 (29%), Positives = 192/399 (48%), Gaps = 27/399 (6%)

Query: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVS 67
           L + ++KQ K  DK Y ++D  GL L V+T G+K W  +Y +    K   ++ G +P++S
Sbjct: 2   LNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKM--LTIGPYPEIS 59

Query: 68  LAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPETA 127
           L+ AR +  E + +LA N+DP   + + L      +++TF   S+ +L   +++   E  
Sbjct: 60  LSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWY 119

Query: 128 DKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPV------KAQGTLET----VKRLCRI 177
           +   R  +K I P +GN PI+++    +  IL+          +GT E     V+++C  
Sbjct: 120 ENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICA- 178

Query: 178 INEVMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRC 237
             EVM+ A+ +  I  +    +      P   H   +E +    ++  I     T  T+ 
Sbjct: 179 --EVMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQN 236

Query: 238 LLEWQLHTMTRPIESATARWQDIDFKNKVWVIPA----------ERMKMKRPHTIPLTEQ 287
            L   L++M R IE   A+   ++ K+    IP             MK  R H +PL+ Q
Sbjct: 237 ALRTALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQ 296

Query: 288 TLALLEIMKPISSHREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTL 347
            L +++    +     Y+FP +    S +   + N AL  MG  G +  H  RA AST L
Sbjct: 297 MLEIIKEQLQLYPDSIYLFPGDDGI-SMLGKNTLNEALVNMGL-GHITMHDFRATASTYL 354

Query: 348 NEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLM 386
           NEQ ++ D IE  LAHVD +  R +YN A +L+ RR++M
Sbjct: 355 NEQNYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMM 393