Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  271 bits (692), Expect = 9e-77
 Identities = 194/579 (33%), Positives = 315/579 (54%), Gaps = 31/579 (5%)

Query: 78  SDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIEN--DPNWEPEDDYDPRSRGWYQEAKK 135
           +D  Y+N  I G A    FL   +        ++   D N +       R+  +Y  +K+
Sbjct: 135 NDAAYVNSPIVGMAADGRFLPWWYRNADGSLGLDKLADVNDQNILSTGVRASEYYLCSKE 194

Query: 136 NKRIFITEPYLDTEGKNFLVSISSPVADTMNN--FIGAMYFDVDLSRIQKNVD--DINLF 191
           NK+    +P     G N +V ++S +   M +  F G +  D+ ++ IQ  +   D  L+
Sbjct: 195 NKKACAIDPAPYKVG-NAMVMLASFIEPIMIDGAFQGIVGADLSVNFIQDMLTSADQKLY 253

Query: 192 E-AGYVFITSNTGKVIIHS-NTDELGKNVKDIY------NGFRLDKGKVVLSVNGVNKWL 243
             AG + + S+ G+++ ++ +  +LG+   D+       N  +L  G+V   ++  +  +
Sbjct: 254 NGAGEMALISSNGRLVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDKEHGHI 313

Query: 244 -----YTSPILGGDWFIIAVIDESIAMQSINKMKYEL-------IFYSAI-GLVFGG--- 287
                +T       W ++  +  S  M    K++ +L       IF   I GL+  G   
Sbjct: 314 ELFLPFTIGQADARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGL 373

Query: 288 LILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQ 347
           L++  +   +  PLK + + + DIA G GDLT++L ++   E   +A GFN+F   L   
Sbjct: 374 LVIWLVGHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGM 433

Query: 348 IRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVA 407
           I Q+ +    V D +E TA+ A  +   V +Q+ E++Q+ATA++EM  TA +VA +A  A
Sbjct: 434 ITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQA 493

Query: 408 ADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIA 467
           A AA   + A+ +G  +V +T+ +I  L+  IG +V  V+ L K ++ I  +L  I  IA
Sbjct: 494 AQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIA 553

Query: 468 DQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVS 527
           +QTNLLALNAAIEAARAGE GRGFAVVADEVR LAQ+TQ++T +I  +I+QLQ+G ++V 
Sbjct: 554 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVV 613

Query: 528 RSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTV 587
           R M++S+  TD  V+   +  E +  + QA+  I+DMN QIASAAEEQS VAE+IN N +
Sbjct: 614 RVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVI 673

Query: 588 NIKDLSIKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626
           NI  ++ +++  A  +           ++Q  L+N+FK+
Sbjct: 674 NIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712