Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (600), Expect = 4e-66
 Identities = 174/657 (26%), Positives = 328/657 (49%), Gaps = 65/657 (9%)

Query: 1   MNVGFVKKLIFISSFILLVTVAFVVWE--GYTTAKKEV----SVVIEDGINEIINKTERF 54
           M +GF  ++   +S ++LVT++ +V       + K+E+    +   ++ +N  +++ E +
Sbjct: 8   MTLGFKGRIY--ASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFW 65

Query: 55  VSLKLESDISLASSIVDSIS--------LRISDEQYINDIINGNAIKKAFLSTGFGFDSN 106
           V  + E+    A+     +S          +++   I ++I      ++++S     D  
Sbjct: 66  VKSRYEAVSRGANLFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMS----MDKE 121

Query: 107 GKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMN 166
           G V  N   +   D        WYQ+AK  +  F+TE Y D      ++S  SP+     
Sbjct: 122 GGVTTNRFKFTDRD--------WYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILH-QG 172

Query: 167 NFIGAMYFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIYNGFR 226
            F+GA+  D  L  I   V ++  F  G   +T          + +++G+    +   FR
Sbjct: 173 QFVGALLGDFQLDDIITQVSNMR-FAGGAATLTDKNAVFFASDDPNDIGRTPSQVSPSFR 231

Query: 227 --------LDKGKVVLSVNGVNKWLYTSPILGGD---WFIIAVIDESIAMQSINKMKYEL 275
                    + G +     G+    Y   +   D   W ++  +D++ A+  ++      
Sbjct: 232 EMEAGFHRQESGHLSFPYLGIEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANA 291

Query: 276 IFYSAIGLVFGGL---ILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSE 332
           I     G+V  G+   +++FI+ ++  PL  L  A+ D+A G GDLT++L+ N + + ++
Sbjct: 292 I---TTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQ 348

Query: 333 LALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNE 392
           ++ GFN F+  L + + Q+      +    E+ +  A+ +  ++     E +Q+ TA+ +
Sbjct: 349 ISEGFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQ 408

Query: 393 MAMTASEVANSA----QVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKE 448
           M+ +A  VA S     Q+   A+KE + + +    +V+     +  L   + +  E +  
Sbjct: 409 MSESARTVAESVTQSNQITEAASKEAQQSLV----IVNNAVSTVTSLVNDVENMSESISN 464

Query: 449 LVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQS 508
           + +  ++I  VL VI  I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S
Sbjct: 465 MNRDANKISEVLSVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNS 524

Query: 509 TMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQI 568
           T +IS+++ +L EG  +V  +M+ +K +     +KT++V+  ++++  ++  I D++ QI
Sbjct: 525 TTEISDMLTKLLEGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQI 584

Query: 569 ASAAEEQSLVAEEINNNTVNIKDL----------SIKLSEAASNAGTEMNAQVSKVK 615
           A+A E+QS VA E++ N ++I+++          ++  +E+ S++  E+   V K K
Sbjct: 585 AAATEQQSTVAAELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFK 641



 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 423 SVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIET-VLDVINDIADQTNLLALNAAIEA 481
           +V +  T  I  + I +G  +  + ++ K   R++  VLD+     D T  L +N   + 
Sbjct: 287 AVANAITTGIVLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDL 346

Query: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVV 541
           A+  E   GF   +  ++ +  +   +T  IS  IEQL + AK   + +     ETD VV
Sbjct: 347 AQISE---GFNRFSGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVV 403

Query: 542 EKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAAS 601
               Q++E    V +++ + S+   + AS   +QSLV   I NN V+     +   E  S
Sbjct: 404 TAITQMSESARTVAESVTQ-SNQITEAASKEAQQSLV---IVNNAVSTVTSLVNDVENMS 459

Query: 602 NAGTEMNAQVSKVKE 616
            + + MN   +K+ E
Sbjct: 460 ESISNMNRDANKISE 474