Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  226 bits (577), Expect = 2e-63
 Identities = 140/334 (41%), Positives = 197/334 (58%), Gaps = 16/334 (4%)

Query: 279 SAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFN 338
           + + L  G L    I R+++ PL+    A + +ASG  DLT+ L      E  +L    +
Sbjct: 293 TVLALALGLLAAWAITRQIIIPLRQTLRAAERVASG--DLTQSLQVQRRDELGQLQASMH 350

Query: 339 SFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVSRLVVEQ-------QLQELEQLATAMN 391
             T+        L+ +  G+ DG  + A+ AE    V EQ       Q  E +Q+ATAMN
Sbjct: 351 RMTQ-------GLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMN 403

Query: 392 EMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVK 451
           +M  T  EVA +A+ A++AA   +  + EG  VV E    I+RL+  + +S E +  L  
Sbjct: 404 QMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKT 463

Query: 452 ATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQ 511
            +D+I +VLDVI  +A QTNLLALNAAIEAARAGE+GRGFAVVADEVR+LAQRTQQST +
Sbjct: 464 ESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEE 523

Query: 512 ISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASA 571
           I E+I  LQ G + V+  MD S+  TD  VE T +    +  + + +  I  MN QIA+A
Sbjct: 524 IEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATA 583

Query: 572 AEEQSLVAEEINNNTVNIKDLSIKLSEAASNAGT 605
           AEEQ+ VAEEIN + +N++D+S + S A+    +
Sbjct: 584 AEEQTAVAEEINRSVMNVRDISDQTSAASEETAS 617



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 58/316 (18%), Positives = 113/316 (35%), Gaps = 27/316 (8%)

Query: 313 SGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIASGVLDGAEKTANEAEVS 372
           SG  D  +     +D+  +EL            + +    T   G  D   +  N    +
Sbjct: 190 SGNADYQQTALKAIDQALAELRALPAKVPAEHAASLDDAATAMGGYRDAVTQFGN----A 245

Query: 373 RLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEGSSVVHETTDAI 432
           +L  EQ LQ + +  T +    + AS++  ++Q     A   ++ +L   + V      +
Sbjct: 246 QLASEQALQRMVEQGTVL----LQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGL 301

Query: 433 QRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEAARAGESGRGFA 492
                     +  +++ ++A +R+ +         D T  L +    E    G+      
Sbjct: 302 LAAWAITRQIIIPLRQTLRAAERVAS--------GDLTQSLQVQRRDEL---GQLQASMH 350

Query: 493 VVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVVEKTNQVNEKIS 552
            +   +R L         QI+   E+L    +  S  ++  K+ETD V    NQ+   + 
Sbjct: 351 RMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVH 410

Query: 553 LVQQAIHRISDMNLQIASAAEEQSLVA-------EEINNNTVNIKDLSIKLSEAASNAGT 605
            V +   + S+  L     A E   V        E + +  VN  +    L   +   G+
Sbjct: 411 EVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGS 470

Query: 606 EMNAQVSKVKEQNELL 621
            ++  +  V +Q  LL
Sbjct: 471 VLDV-IKSVAQQTNLL 485