Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  366 bits (939), Expect = e-105
 Identities = 211/526 (40%), Positives = 311/526 (59%), Gaps = 13/526 (2%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT       +   ++STT     ITY N  F++ISGF+ +EL+  PHN+VRHPD
Sbjct: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSRDELVRAPHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           +PPA FAHMWSTLK G  WMG+VKNRCK GDHYWV+A+  P+ +  +VV Y+SVR KP  
Sbjct: 61  VPPAVFAHMWSTLKQGLPWMGIVKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTA 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSILFL 184
             ++ AE  Y ++  GK+ +P+      W  +L  W   F  ++ +S +  ++L S    
Sbjct: 121 EQIRRAEALYHRINQGKSAIPQRD---KWLPVLQDWLP-FILVSQLSFMIGASLNSHWGF 176

Query: 185 TLLVG---SITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQ 241
            L  G    +  LG+++    +KRL++   + + +PL   +YT       +LE ++   +
Sbjct: 177 ALAAGLSVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQE 236

Query: 242 AETSAVIGRIGDASNQLNKFA---NDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQ 298
           A     + R+ D +  LN  A   N L HN   S+     Q+ ETEQVATA+N+MAA+ Q
Sbjct: 237 ARLKTCLTRLQDTAEHLNDQAAQSNTLAHN---SSSGLERQRVETEQVATAVNQMAATTQ 293

Query: 299 EVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISK 358
           EVA+  +  A++++ AN  T  G+ I  +  ++I  L   V +    + +L + S++I  
Sbjct: 294 EVASHVQRTADATQEANRLTGRGRDIAGETREAIQRLSVAVGETGVTVTQLAKDSDEIGG 353

Query: 359 VLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDT 418
           V++VI+ IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT +ST  I  +I  
Sbjct: 354 VVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHALIAK 413

Query: 419 LQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAV 478
           LQ  A  AV  M+   +QA   V +  +A  AL GI + V+ IT M+ Q+A A ++QS+V
Sbjct: 414 LQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSV 473

Query: 479 SDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQF 524
           ++EI+ +IS I + AD   +    +A+ +E +   ++    L ++F
Sbjct: 474 AEEISRNISTIALLADQTSEQAMNSAQLSEELTHTANTQYSLVERF 519