Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  338 bits (868), Expect = 2e-97
 Identities = 201/492 (40%), Positives = 281/492 (57%), Gaps = 5/492 (1%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT   I L+ S  ++S T     ITY N  F+ ISGF   +LIG P N+VRHPD
Sbjct: 1   MRNNQPVTQREISLAPSQKLISATDVRGVITYCNDAFVDISGFERADLIGAPQNIVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           +PPA FAHMW  LK G  WMG+VKNR KNGDHYWV+A+  PI    KVV ++SVR KP  
Sbjct: 61  VPPAVFAHMWGALKQGLPWMGIVKNRSKNGDHYWVNAYVTPIFDGSKVVGFESVRVKPTA 120

Query: 125 SHVQAAEKAYAQLRNGKNILPK--IRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182
             ++ A+  Y ++  GK  +P+    L      +  V   L  S+A + L  P A+   +
Sbjct: 121 DEIRRAQALYRRISQGKPGVPRQDAWLPAAINCVPYVATGLTGSLAGMFLSAPVAIAVAV 180

Query: 183 FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242
            + + VG + +    +      RL+      + + L   +Y+       +LE A     A
Sbjct: 181 AVAVPVGVLCS---RWRQGSTLRLLHGVEPSTSDALIAQMYSDARGPQARLETAFLSQNA 237

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
                + R+ D++ QL+  A         S+     Q+ ETEQV+ A+N+MAA+ QEVA+
Sbjct: 238 RLKTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQMAATTQEVAS 297

Query: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362
             +  A++++ AN  T  G+++     ++I  L   VS+    + +L + SN+I  V++V
Sbjct: 298 HVQRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVDV 357

Query: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422
           I+ IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT QST  I  +I  LQ  
Sbjct: 358 IKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIHGLITQLQAS 417

Query: 423 AKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEI 482
           +  AV  ME+  +QA   V    +A  AL GI + VS IT M+ Q+A A ++QSAV++EI
Sbjct: 418 SNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATEEQSAVAEEI 477

Query: 483 NHSISNIRMAAD 494
           + +I+ I   AD
Sbjct: 478 SRNITTIAELAD 489