Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  236 bits (602), Expect = 2e-66
 Identities = 172/525 (32%), Positives = 264/525 (50%), Gaps = 60/525 (11%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR NLPVTG   EL     ++S T     ITYVNP F++ SG+A +EL+G+ HN+VRHPD
Sbjct: 1   MRVNLPVTGIEYELPRDAALVSRTDLKGRITYVNPAFVEASGYAVDELMGKAHNIVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           +PP AFA +W TL  G  W G++KNR  NGD YWV A   PI ++G+V  Y SVR++P+ 
Sbjct: 61  VPPEAFADLWQTLGQGLPWTGIIKNRRSNGDFYWVLANVTPIRRDGRVQGYMSVRSRPDR 120

Query: 125 SHVQAAEKAYAQLRNG-----------------KNILPKIR--------LGFHWKLILLV 159
           + V  A+  Y +LR G                  N L ++R         G      LL 
Sbjct: 121 ADVAEADALYRRLREGGAKGVTLQQGQVVQRGWMNPLAQLRRIPVRQRVFGATTAAALLT 180

Query: 160 WGSLFASIAIVSLIYPSALMSILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLS 219
            G   A       +  SA +     + L G++   G+ + L  +  L Q   +    PL 
Sbjct: 181 LGLGIAGWMEAGRLVASAGVH----SWLPGALAAGGVGFALAWL-GLGQFLGRTVFRPLD 235

Query: 220 QVLYTGRSDEFGQL-EFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNI-----EKSN 273
           + L+  R+   G L +F +R    E + ++  +   S  L     D+  N+       S 
Sbjct: 236 EALHVARAIAGGDLAKFEIRRGD-EITGLLRALNQMSANLFAIVADVGTNVAGVMSASSQ 294

Query: 274 ILTSEQ--QAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQS 331
           I +  Q   + TEQ A+++ + AAS++E+ +  K  A+++  AN   +S  ++  +    
Sbjct: 295 IASGNQDLSSRTEQQASSLEQTAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGS- 353

Query: 332 ITELEHEVSQAKQVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGF 391
                  VSQ    +  +   S  I  ++ VI  IA QTN+LALNAA+EAARAGE G+GF
Sbjct: 354 ------VVSQVVDTMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGKGF 407

Query: 392 AVVADEVRGLAARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADAL 451
           AVVA EVR LA R+  +  +I+ +I         +V  +E  S+Q    V +A +  + +
Sbjct: 408 AVVASEVRSLAQRSAAAAKEIKTLIGD-------SVEKVEAGSKQ----VAEAGRTMEEI 456

Query: 452 TGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMAADTN 496
            G  +RV+DI G   ++ TA  +Q++  ++IN +I+ +      N
Sbjct: 457 VGSVRRVTDIMG---EITTASQEQTSGIEQINQAIAQMDQVTQQN 498