Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  379 bits (972), Expect = e-109
 Identities = 216/519 (41%), Positives = 314/519 (60%), Gaps = 16/519 (3%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT   +      N+LSTTT  SHI Y + +F  ++G+  +EL+ QPHNMVRHPD
Sbjct: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPP AF  MW  LK+G+SWMG+VKNRCKNGDHYWV AFA PI +NGKVVEYQSVR  P  
Sbjct: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120

Query: 125 SHVQAAEKAYAQLRNGKNI----LPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMS 180
            HV  A+K Y +++ GK      +P+ RL     L  +V   +  S A       + L  
Sbjct: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGV--SFAADRFFAGAGLPL 178

Query: 181 ILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMA 240
           +L LT+L+    T  +       + L Q   K  DNPL +++Y GR D+  +++ A++M 
Sbjct: 179 MLVLTILMAYQFTRRL-------ETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMR 231

Query: 241 QAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEV 300
           Q+E +AV+GRI D+S Q+ + A     N   +      Q  ETEQ+ATAI +M  +  E+
Sbjct: 232 QSELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEI 291

Query: 301 ATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVL 360
           A  A+ A++++  A +    G   V Q   +I E+  ++  A  VI +L   S  I +V+
Sbjct: 292 AHNAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVM 351

Query: 361 EVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQ 420
           EVI+SIA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA R+ +ST +IQ +I ++Q
Sbjct: 352 EVIQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQ 411

Query: 421 GRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSD 480
              + AV  +E  ++ ++  V+ A  + D LT +  +VSDIT  + Q+ATA+++ + V++
Sbjct: 412 TSTRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTE 471

Query: 481 EINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSE 519
           ++N S+ +I   +D + +   +          L+HNL++
Sbjct: 472 DMNRSVQSI---SDVSTETLGLAENTQNECRQLAHNLAQ 507



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 17/86 (19%)

Query: 277 SEQQAETEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELE 336
           S+     EQ+ATAI EM              AN +E  N    S Q I   +++++   E
Sbjct: 450 SDITMRNEQIATAIEEM--------------ANVTEDMNR---SVQSISDVSTETLGLAE 492

Query: 337 HEVSQAKQVIHELEEHSNDISKVLEV 362
           +  ++ +Q+ H L + ++ +++   V
Sbjct: 493 NTQNECRQLAHNLAQQTSLVAQFRRV 518