Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 514 a.a., Aerotaxis sensor receptor protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  257 bits (656), Expect = 8e-73
 Identities = 167/527 (31%), Positives = 269/527 (51%), Gaps = 57/527 (10%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT    E    + +LSTT   SHI + N  FL++SGF  EELIGQPHN+VRHPD
Sbjct: 1   MRNNQPVTQQEHEFDEHSTLLSTTDTQSHIVHANAAFLQVSGFTAEELIGQPHNLVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MPP AFA MW+TL+ G  W  LVKNR KNGDHYWV A A P+++NG +  Y SVRTKP  
Sbjct: 61  MPPQAFADMWATLRQGMPWSALVKNRRKNGDHYWVRANAAPVMRNGVLTGYLSVRTKPAR 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGS------LFASIAIVSLIYPSAL 178
             VQ AE  Y + R G+    +   G   +   L W S      +   I +  L+    +
Sbjct: 121 DEVQGAEALYQRFREGRAQGWRFFRGLVVRSGPLAWLSWSRWLGVSGRIRLALLLPGVGM 180

Query: 179 MSILFLTLLVGS--ITTLGITYLLV-------------PMKRLIQSYCKDSDNPLSQVLY 223
            ++L L+ L G     T G+  LL+             P+K ++Q   + +      +  
Sbjct: 181 AAVLALSGLTGERLAWTAGLLALLLAGAAFWLQRQLAEPLKLVLQQAQRVASGHAGGLAS 240

Query: 224 TGRSDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAET 283
             R DE G L   +  +     +++  +   +  ++  + ++ H  +  +  T +  A  
Sbjct: 241 LNRVDEIGMLLLTVNQSALNLRSLLADMSTQAAGVSVASGEIAHGNDDLSSRTEQTAANL 300

Query: 284 EQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAK 343
           +Q A+++ ++ A++++ A+ A+ AA  +   +    SG + +   +++            
Sbjct: 301 QQTASSMEQLVATMRQNASAAQDAATLARQTSEVASSGGEAMRAMART------------ 348

Query: 344 QVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAA 403
             + ++   S+ I++ ++++  IA QTN+LALNAA+EAARAGE GRGFAVV+ EVR LA 
Sbjct: 349 --MEQITRSSHRIAEFVDIVDGIAFQTNILALNAAVEAARAGEQGRGFAVVSTEVRTLAQ 406

Query: 404 RTQQSTMDIQRMID-TLQGRAKLAVAVMEHSSQQALL-----------------SVEQAQ 445
           R+  +  +I+ +ID +L G  + A  V    S+   +                 SV+Q +
Sbjct: 407 RSANAAKEIRELIDGSLAGIREGAAQVEATGSRMNEIVAQVGDLTRLITTVNAASVQQTR 466

Query: 446 QAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINHSISNIRMA 492
           +     T +G+    +  M+ Q A  V+Q +A ++ +NH   +++ A
Sbjct: 467 EMEQLNTAVGR----LDEMTQQNAALVEQSAAAANALNHQSQSMKSA 509



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 39/83 (46%)

Query: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302
           E +A +   G   N++     DL   I   N  + +Q  E EQ+ TA+  +    Q+ A 
Sbjct: 428 EGAAQVEATGSRMNEIVAQVGDLTRLITTVNAASVQQTREMEQLNTAVGRLDEMTQQNAA 487

Query: 303 GAKHAANSSESANHETISGQQIV 325
             + +A ++ + NH++ S +  V
Sbjct: 488 LVEQSAAAANALNHQSQSMKSAV 510